Publications
2025
MICCAI · 2025

@inproceedings{esmaeilzadeh2025cape,
title = {{CAPE: Connectivity-Aware Path Enforcement Loss for Curvilinear Structure Delineation}},
author = {Esmaeilzadeh, Elyar and Garaaghaji, Ehsan and Hallaji Azad, Farzad and {\"{O}}ner, Doruk},
booktitle = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2025},
pages = {183--193},
year = {2025},
publisher = {Springer Nature Switzerland},
doi = {10.1007/978-3-032-05162-2_18}
}
TMLR · 2025

@article{talabot2025partsdf,
title = {{PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization}},
author = {Talabot, Nicolas and Clerc, Olivier and Demirtas, Arda Cinar and Goujon, Alexis and Le, Hieu and {\"{O}}ner, Doruk and Fua, Pascal},
journal = {Transactions on Machine Learning Research},
issn = {2835-8856},
year = {2025},
url = {https://openreview.net/forum?id=zl43C1yBKv}
}
MVA · 2025

@article{gwizdala2025vision,
title = {{Vision-based power line cables and pylons detection for low flying aircraft}},
author = {Gwizda{\l}a, Jakub and {\"{O}}ner, Doruk and Roy, Soumava Kumar and Shah, Mian Akbar and Eberhard, Ad and Egorov, Ivan and Kr{\"{u}}si, Philipp and Yakushev, Grigory and Fua, Pascal},
journal = {Machine Vision and Applications},
volume = {36},
number = {2},
pages = {46},
year = {2025},
doi = {10.1007/s00138-025-01664-1}
}
Comms. Medicine · 2025
@article{kozinski2025harnessing,
title = {{Harnessing deep learning to detect bronchiolitis obliterans syndrome from chest CT}},
author = {Kozi{\'{n}}ski, Mateusz and {\"{O}}ner, Doruk and Gwizda{\l}a, Jakub and Beigelman-Aubry, Catherine and Fua, Pascal and Koutsokera, Angela and Casutt, Alessio and Vraka, Argyro and De Palma, Michele and Aubert, John-David and Bischof, Horst and von Garnier, Christophe and Rahi, Sahand Jamal and Urschler, Martin and Mansouri, Nahal},
journal = {Communications Medicine},
volume = {5},
number = {1},
pages = {18},
year = {2025},
doi = {10.1038/s43856-025-00732-x}
}
Dataset · 2025

@misc{talabot2025dataset,
title = {{Dataset for ``PartSDF: Part-Based Implicit Neural Representation for Composite 3D Shape Parametrization and Optimization''}},
author = {Talabot, Nicolas and Clerc, Olivier and Demirtas, Arda Cinar and Goujon, Alexis and Le, Hieu and {\"{O}}ner, Doruk and Fua, Pascal},
year = {2025},
howpublished = {Zenodo},
doi = {10.5281/zenodo.17466765},
url = {https://zenodo.org/doi/10.5281/zenodo.17466765}
}
ICML · 2025

@inproceedings{durasov2025idempotent,
title = {{{IT}$^3$: Idempotent Test-Time Training}},
author = {Durasov, Nikita and Shocher, Assaf and {\"{O}}ner, Doruk and Chechik, Gal and Efros, Alexei A and Fua, Pascal},
booktitle = {Proceedings of the 42nd International Conference on Machine Learning},
series = {Proceedings of Machine Learning Research},
volume = {267},
pages = {14867--14883},
year = {2025},
publisher = {PMLR},
url = {https://proceedings.mlr.press/v267/durasov25a.html}
}
2024
ICML · 2024

@inproceedings{durasov2024enabling,
title = {{Enabling Uncertainty Estimation in Iterative Neural Networks}},
author = {Durasov, Nikita and {\"{O}}ner, Doruk and Donier, Jonathan and Le, Hieu and Fua, Pascal},
booktitle = {Proceedings of the 41st International Conference on Machine Learning},
series = {Proceedings of Machine Learning Research},
volume = {235},
pages = {12172--12189},
year = {2024},
publisher = {PMLR},
url = {https://proceedings.mlr.press/v235/durasov24a.html}
}
2023
TPAMI · 2023

@article{oner2023persistent,
title = {{Persistent Homology With Improved Locality Information for More Effective Delineation}},
author = {{\"{O}}ner, Doruk and Garin, Ad{\'{e}}lie and Kozi{\'{n}}ski, Mateusz and Hess, Kathryn and Fua, Pascal},
journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
volume = {45},
number = {8},
pages = {10588--10595},
year = {2023},
doi = {10.1109/TPAMI.2023.3246921}
}
Ph.D. Thesis · 2023
@phdthesis{oner2023topologically,
title = {{Topologically Better Delineation of Curvilinear Structures}},
author = {{\"{O}}ner, Doruk},
school = {EPFL},
year = {2023},
doi = {10.5075/epfl-thesis-9749}
}
2022
CBM · 2022
@article{pantojarosero2022topo,
title = {{TOPO-Loss for continuity-preserving crack detection using deep learning}},
author = {Pantoja-Rosero, B.G. and {\"{O}}ner, D. and Kozi{\'{n}}ski, M. and Achanta, R. and Fua, P. and P{\'{e}}rez-Cruz, F. and Beyer, K.},
journal = {Construction and Building Materials},
volume = {344},
pages = {128264},
year = {2022},
doi = {10.1016/j.conbuildmat.2022.128264}
}
MICCAI · 2022

@inproceedings{oner2022enforcing,
title = {{Enforcing Connectivity of 3D Linear Structures Using Their 2D Projections}},
author = {{\"{O}}ner, Doruk and Osman, Hussein and Kozi{\'{n}}ski, Mateusz and Fua, Pascal},
booktitle = {Medical Image Computing and Computer Assisted Intervention -- MICCAI 2022},
pages = {591--601},
year = {2022},
publisher = {Springer Nature Switzerland},
doi = {10.1007/978-3-031-16443-9_57}
}
TMI · 2022

@article{oner2022adjusting,
title = {{Adjusting the Ground Truth Annotations for Connectivity-Based Learning to Delineate}},
author = {{\"{O}}ner, Doruk and Kozi{\'{n}}ski, Mateusz and Citraro, Leonardo and Fua, Pascal},
journal = {IEEE Transactions on Medical Imaging},
volume = {41},
number = {12},
pages = {3675--3685},
year = {2022},
doi = {10.1109/TMI.2022.3193072}
}
TPAMI · 2022

@article{oner2022promoting,
title = {{Promoting Connectivity of Network-Like Structures by Enforcing Region Separation}},
author = {{\"{O}}ner, Doruk and Kozi{\'{n}}ski, Mateusz and Citraro, Leonardo and Dadap, Nathan C. and Konings, Alexandra G. and Fua, Pascal},
journal = {IEEE Transactions on Pattern Analysis and Machine Intelligence},
volume = {44},
number = {9},
pages = {5401--5413},
year = {2022},
doi = {10.1109/TPAMI.2021.3074366}
}
2021
AGU Advances · 2021
@article{dadap2021drainage,
title = {{Drainage Canals in Southeast Asian Peatlands Increase Carbon Emissions}},
author = {Dadap, Nathan C. and Hoyt, Alison M. and Cobb, Alexander R. and {\"{O}}ner, Doruk and Kozi{\'{n}}ski, Mateusz and Fua, Pascal V. and Rao, Krishna and Harvey, Charles F. and Konings, Alexandra G.},
journal = {AGU Advances},
volume = {2},
number = {1},
pages = {e2020AV000321},
year = {2021},
doi = {10.1029/2020AV000321}
}
2018
AISTATS · 2018

@inproceedings{turgay2018multi,
title = {{Multi-objective Contextual Bandit Problem with Similarity Information}},
author = {Tur{\u{g}}ay, Eralp and {\"{O}}ner, Doruk and Tekin, Cem},
booktitle = {Proceedings of the Twenty-First International Conference on Artificial Intelligence and Statistics},
series = {Proceedings of Machine Learning Research},
volume = {84},
pages = {1673--1681},
year = {2018},
publisher = {PMLR},
url = {https://proceedings.mlr.press/v84/turgay18a.html}
}
arXiv · 2018

@article{oner2018combinatorial,
title = {{Combinatorial Multi-Objective Multi-Armed Bandit Problem}},
author = {{\"{O}}ner, Doruk and Karakurt, Altu{\u{g}} and Ery{\i}lmaz, Atilla and Tekin, Cem},
journal = {arXiv preprint arXiv:1803.04039},
year = {2018},
eprint = {1803.04039},
archiveprefix = {arXiv}
}
Full and up-to-date list on Google Scholar.